GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.A11G115100 [ Gobar.A11G115100]	A11	10917850	10922920	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.A11G115100.1 Gobar.A11G115100.1	High	No	721	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -18.460 AMFE: -0.526 GC content %: 35.090
Gbarbadense_Gobar.A11G115100.2 Gobar.A11G115100.2	High	No	580	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -17.879 AMFE: -0.532 GC content %: 33.621
Gbarbadense_Gobar.A11G115100.3 Gobar.A11G115100.3	High	No	634	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -18.565 AMFE: -0.542 GC content %: 34.227
Gbarbadense_Gobar.A11G115100.4 Gobar.A11G115100.4	High	No	566	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -19.329 AMFE: -0.529 GC content %: 36.572

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).