Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D03G112300 [ Gobar.D03G112300] |
D03 | 36693331 | 36696973 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D03G112300.1 Gobar.D03G112300.1 |
Low | No | 1472 | OG0000369 | Get ORF Coding potential... Type: noncoding Potential: -0.088 Folding energies... MFEI: -24.633 AMFE: -0.699 GC content %: 35.258 | |
Gbarbadense_Gobar.D03G112300.2 Gobar.D03G112300.2 |
Low | No | 2067 | OG0000369 | Get ORF Coding potential... Type: noncoding Potential: -0.244 Folding energies... MFEI: -24.746 AMFE: -0.723 GC content %: 34.204 | |
Gbarbadense_Gobar.D03G112300.3 Gobar.D03G112300.3 |
Low | No | 2155 | OG0000369 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -24.487 AMFE: -0.719 GC content %: 34.060 | |
Gbarbadense_Gobar.D03G112300.5 Gobar.D03G112300.5 |
Low | No | 1947 | OG0000369 | Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -24.217 AMFE: -0.704 GC content %: 34.412 | |
Gbarbadense_Gobar.D03G112300.6 Gobar.D03G112300.6 |
Low | No | 1694 | OG0000369 | Get ORF Coding potential... Type: noncoding Potential: -0.201 Folding energies... MFEI: -24.652 AMFE: -0.740 GC content %: 33.294 | |
Gbarbadense_Gobar.D03G112300.7 Gobar.D03G112300.7 |
Low | No | 1881 | OG0000369 | Get ORF Coding potential... Type: noncoding Potential: -0.217 Folding energies... MFEI: -24.301 AMFE: -0.731 GC content %: 33.227 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gbarbadense_Gobar.D03G112300.6 | SwissProt | 2021-04-01 | Q9SXB6 | 1.26e-9 |
Gbarbadense_Gobar.D03G112300.7 | SwissProt | 2021-04-01 | Q9SXB6 | 2.99e-4 |
Gbarbadense_Gobar.D03G112300.1 | SwissProt | 2021-04-01 | Q9SXB6 | 2.89e-7 |
Gbarbadense_Gobar.D03G112300.2 | SwissProt | 2021-04-01 | Q9SXB6 | 8.39e-9 |
Gbarbadense_Gobar.D03G112300.3 | SwissProt | 2021-04-01 | Q9SXB6 | 3.07e-4 |
Gbarbadense_Gobar.D03G112300.5 | SwissProt | 2021-04-01 | Q9SXB6 | 2.74e-4 |