Gbarbadense Gobar.D04G194200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.D04G194200 [ Gobar.D04G194200] |
D04 | 51751119 | 51752909 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.D04G194200.1 Gobar.D04G194200.1 |
High | No | 589 | OG0001205 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -27.063 AMFE: -0.623 GC content %: 43.463 | |
| Gbarbadense_Gobar.D04G194200.2 Gobar.D04G194200.2 |
High | No | 748 | OG0001205 | Get ORF Coding potential... Type: noncoding Potential: -0.216 Folding energies... MFEI: -25.709 AMFE: -0.557 GC content %: 46.123 | |
| Gbarbadense_Gobar.D04G194200.3 Gobar.D04G194200.3 |
High | No | 755 | OG0001205 | Get ORF Coding potential... Type: noncoding Potential: -0.220 Folding energies... MFEI: -25.907 AMFE: -0.560 GC content %: 46.225 | |
| Gbarbadense_Gobar.D04G194200.4 Gobar.D04G194200.4 |
High | No | 727 | OG0001205 | Get ORF Coding potential... Type: noncoding Potential: -0.354 Folding energies... MFEI: -25.337 AMFE: -0.551 GC content %: 45.942 | |
| Gbarbadense_Gobar.D04G194200.5 Gobar.D04G194200.5 |
High | No | 734 | OG0001205 | Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -25.545 AMFE: -0.555 GC content %: 46.049 | |
| Gbarbadense_Gobar.D04G194200.6 Gobar.D04G194200.6 |
High | No | 590 | OG0001205 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -27.390 AMFE: -0.624 GC content %: 43.898 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
