Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D08G022900 [ Gobar.D08G022900] |
D08 | 1840206 | 1843854 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D08G022900.1 Gobar.D08G022900.1 |
Low | No | 1071 | OG0001053 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -25.649 AMFE: -0.659 GC content %: 38.936 | |
Gbarbadense_Gobar.D08G022900.2 Gobar.D08G022900.2 |
Low | No | 986 | OG0001053 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -26.288 AMFE: -0.666 GC content %: 39.452 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gbarbadense_Gobar.D08G022900.1 | SwissProt | 2021-04-01 | Q5MR23 | 7.35e-5 |
Gbarbadense_Gobar.D08G022900.2 | SwissProt | 2021-04-01 | Q5MR23 | 7.0e-5 |