GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.D08G147700 [ Gobar.D08G147700]	D08	43198480	43200130	v1.1	Gossypium barbadense (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.D08G147700.2 Gobar.D08G147700.2	High	No	1240	OG0002070		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -23.436 AMFE: -0.542 GC content %: 43.226
Gbarbadense_Gobar.D08G147700.3 Gobar.D08G147700.3	High	No	1156	OG0002070		Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -23.807 AMFE: -0.550 GC content %: 43.253
Gbarbadense_Gobar.D08G147700.4 Gobar.D08G147700.4	High	No	1063	OG0002070		Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -23.246 AMFE: -0.520 GC content %: 44.685
Gbarbadense_Gobar.D08G147700.5 Gobar.D08G147700.5	High	No	979	OG0002070		Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -23.565 AMFE: -0.526 GC content %: 44.842

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).