Gbarbadense Gobar.D10G062400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.D10G062400 [ Gobar.D10G062400] |
D10 | 5357732 | 5362181 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.D10G062400.1 Gobar.D10G062400.1 |
High | No | 1322 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -24.682 AMFE: -0.658 GC content %: 37.519 | |
| Gbarbadense_Gobar.D10G062400.10 Gobar.D10G062400.10 |
High | No | 1043 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -25.081 AMFE: -0.641 GC content %: 39.118 | |
| Gbarbadense_Gobar.D10G062400.2 Gobar.D10G062400.2 |
High | No | 1233 | OG0008224 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -24.453 AMFE: -0.651 GC content %: 37.551 | |
| Gbarbadense_Gobar.D10G062400.3 Gobar.D10G062400.3 |
High | No | 1185 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -24.101 AMFE: -0.636 GC content %: 37.890 | |
| Gbarbadense_Gobar.D10G062400.4 Gobar.D10G062400.4 |
High | No | 1159 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -24.012 AMFE: -0.632 GC content %: 37.964 | |
| Gbarbadense_Gobar.D10G062400.5 Gobar.D10G062400.5 |
High | No | 1002 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -23.473 AMFE: -0.621 GC content %: 37.824 | |
| Gbarbadense_Gobar.D10G062400.6 Gobar.D10G062400.6 |
High | No | 897 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -24.025 AMFE: -0.623 GC content %: 38.573 | |
| Gbarbadense_Gobar.D10G062400.7 Gobar.D10G062400.7 |
High | No | 1040 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -25.308 AMFE: -0.647 GC content %: 39.135 | |
| Gbarbadense_Gobar.D10G062400.8 Gobar.D10G062400.8 |
High | No | 951 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -24.995 AMFE: -0.636 GC content %: 39.327 | |
| Gbarbadense_Gobar.D10G062400.9 Gobar.D10G062400.9 |
High | No | 1132 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -25.477 AMFE: -0.654 GC content %: 38.958 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
