Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D10G181900 [ Gobar.D10G181900] |
D10 | 45442285 | 45445072 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D10G181900.1 Gobar.D10G181900.1 |
Low | No | 1701 | OG0003156 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -26.708 AMFE: -0.689 GC content %: 38.742 | |
Gbarbadense_Gobar.D10G181900.10 Gobar.D10G181900.10 |
Low | No | 658 | OG0005469 | Get ORF Coding potential... Type: noncoding Potential: -0.155 Folding energies... MFEI: -24.422 AMFE: -0.611 GC content %: 39.970 | |
Gbarbadense_Gobar.D10G181900.2 Gobar.D10G181900.2 |
Low | No | 1496 | OG0003156 | Get ORF Coding potential... Type: noncoding Potential: -0.244 Folding energies... MFEI: -27.226 AMFE: -0.690 GC content %: 39.439 | |
Gbarbadense_Gobar.D10G181900.3 Gobar.D10G181900.3 |
Low | No | 1689 | OG0003156 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -26.578 AMFE: -0.687 GC content %: 38.662 | |
Gbarbadense_Gobar.D10G181900.6 Gobar.D10G181900.6 |
Low | No | 1508 | OG0003156 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -27.401 AMFE: -0.693 GC content %: 39.523 | |
Gbarbadense_Gobar.D10G181900.9 Gobar.D10G181900.9 |
Low | No | 652 | OG0005469 | Get ORF Coding potential... Type: noncoding Potential: -0.158 Folding energies... MFEI: -24.709 AMFE: -0.617 GC content %: 40.031 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gbarbadense_Gobar.D10G181900.6 | SwissProt | 2021-04-01 | Q888A4 | 7.09e-6 |
Gbarbadense_Gobar.D10G181900.9 | SwissProt | 2021-04-01 | Q888A4 | 1.05e-7 |
Gbarbadense_Gobar.D10G181900.1 | SwissProt | 2021-04-01 | Q888A4 | 8.32e-6 |
Gbarbadense_Gobar.D10G181900.10 | SwissProt | 2021-04-01 | Q888A4 | 2.06e-6 |
Gbarbadense_Gobar.D10G181900.2 | SwissProt | 2021-04-01 | Q888A4 | 8.3e-6 |
Gbarbadense_Gobar.D10G181900.3 | SwissProt | 2021-04-01 | Q888A4 | 1.04e-5 |