GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gbarbadense_Gobar.D11G087000 [ Gobar.D11G087000]	D11	6715071	6717300	v1.1	Gossypium barbadense (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gbarbadense_Gobar.D11G087000.1 Gobar.D11G087000.1	High	No	1402	OG0000580		Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -21.391 AMFE: -0.603 GC content %: 35.449
Gbarbadense_Gobar.D11G087000.2 Gobar.D11G087000.2	High	No	1330	OG0000580		Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -21.383 AMFE: -0.605 GC content %: 35.338
Gbarbadense_Gobar.D11G087000.3 Gobar.D11G087000.3	High	No	1374	OG0000580		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -21.645 AMFE: -0.612 GC content %: 35.371
Gbarbadense_Gobar.D11G087000.4 Gobar.D11G087000.4	High	No	1446	OG0000580		Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -21.639 AMFE: -0.610 GC content %: 35.477

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).