Gbarbadense Gobar.D13G115100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.D13G115100 [ Gobar.D13G115100] |
D13 | 28637858 | 28642144 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gbarbadense_Gobar.D13G115100.2 Gobar.D13G115100.2 |
High | No | 1016 | OG0000922 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -23.583 AMFE: -0.610 GC content %: 38.681 | |
| Gbarbadense_Gobar.D13G115100.3 Gobar.D13G115100.3 |
High | No | 1109 | OG0000922 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -24.013 AMFE: -0.615 GC content %: 39.044 | |
| Gbarbadense_Gobar.D13G115100.4 Gobar.D13G115100.4 |
High | No | 1033 | OG0000922 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -24.046 AMFE: -0.619 GC content %: 38.819 | |
| Gbarbadense_Gobar.D13G115100.5 Gobar.D13G115100.5 |
High | No | 686 | OG0000922 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -25.015 AMFE: -0.617 GC content %: 40.525 | |
| Gbarbadense_Gobar.D13G115100.6 Gobar.D13G115100.6 |
High | No | 589 | OG0000922 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -24.244 AMFE: -0.603 GC content %: 40.238 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
