Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D13G120300 [ Gobar.D13G120300] |
D13 | 30386775 | 30390914 | v1.1 | Gossypium barbadense (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gbarbadense_Gobar.D13G120300.1 Gobar.D13G120300.1 |
Low | No | 1239 | OG0011564 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -20.702 AMFE: -0.714 GC content %: 28.975 | |
Gbarbadense_Gobar.D13G120300.2 Gobar.D13G120300.2 |
Low | No | 726 | OG0011564 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -22.989 AMFE: -0.684 GC content %: 33.609 | |
Gbarbadense_Gobar.D13G120300.3 Gobar.D13G120300.3 |
Low | No | 569 | OG0011564 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -24.411 AMFE: -0.691 GC content %: 35.325 | |
Gbarbadense_Gobar.D13G120300.4 Gobar.D13G120300.4 |
Low | No | 633 | OG0011564 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -23.807 AMFE: -0.664 GC content %: 35.861 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gbarbadense_Gobar.D13G120300.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Gbarbadense_Gobar.D13G120300.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Gbarbadense_Gobar.D13G120300.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Gbarbadense_Gobar.D13G120300.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |