GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gdarwinii_Godar.A06G176600 [ Godar.A06G176600]	A06	105135164	105135691	v1.1	Gossypium darwinii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gdarwinii_Godar.A06G176600.1 Godar.A06G176600.1	High	No	445	OG0033185		Get ORF Coding potential... Type: noncoding Potential: -0.473 Folding energies... MFEI: -22.315 AMFE: -0.552 GC content %: 40.449
Gdarwinii_Godar.A06G176600.2 Godar.A06G176600.2	Low	No	442	OG0033185		Get ORF Coding potential... Type: noncoding Potential: -0.454 Folding energies... MFEI: -22.647 AMFE: -0.559 GC content %: 40.498

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Gdarwinii_Godar.A06G176600.2	SwissProt	2021-04-01	Q39084	2.61e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).