Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.A08G280600 [ Godar.A08G280600] |
A08 | 118532121 | 118536698 | v1.1 | Gossypium darwinii (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.A08G280600.1 Godar.A08G280600.1 |
Low | No | 935 | OG0003073 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -21.872 AMFE: -0.662 GC content %: 33.048 | |
Gdarwinii_Godar.A08G280600.2 Godar.A08G280600.2 |
Low | No | 896 | OG0002015 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -21.150 AMFE: -0.645 GC content %: 32.812 | |
Gdarwinii_Godar.A08G280600.3 Godar.A08G280600.3 |
Low | No | 861 | OG0002015 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -22.404 AMFE: -0.689 GC content %: 32.520 | |
Gdarwinii_Godar.A08G280600.4 Godar.A08G280600.4 |
Low | No | 898 | OG0003073 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -22.405 AMFE: -0.682 GC content %: 32.851 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gdarwinii_Godar.A08G280600.3 | SwissProt | 2021-04-01 | P16709 | 4.08e-4 |
Gdarwinii_Godar.A08G280600.4 | SwissProt | 2021-04-01 | P16709 | 3.05e-5 |
Gdarwinii_Godar.A08G280600.1 | SwissProt | 2021-04-01 | P16709 | 3.2e-5 |
Gdarwinii_Godar.A08G280600.2 | SwissProt | 2021-04-01 | P16709 | 4.26e-4 |