Gdarwinii Godar.A09G052000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gdarwinii_Godar.A09G052000 [ Godar.A09G052000] |
A09 | 22740368 | 22743556 | v1.1 | Gossypium darwinii (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gdarwinii_Godar.A09G052000.1 Godar.A09G052000.1 |
Low | No | 692 | OG0008392 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -21.416 AMFE: -0.549 GC content %: 39.017 | |
| Gdarwinii_Godar.A09G052000.2 Godar.A09G052000.2 |
Low | No | 377 | OG0008392 | Get ORF Coding potential... Type: noncoding Potential: -1.388 Folding energies... MFEI: -20.743 AMFE: -0.437 GC content %: 47.480 | |
| Gdarwinii_Godar.A09G052000.3 Godar.A09G052000.3 |
Low | No | 616 | OG0008392 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -19.318 AMFE: -0.494 GC content %: 39.123 | |
| Gdarwinii_Godar.A09G052000.6 Godar.A09G052000.6 |
Low | No | 580 | OG0008392 | Get ORF Coding potential... Type: noncoding Potential: -1.429 Folding energies... MFEI: -20.448 AMFE: -0.482 GC content %: 42.414 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gdarwinii_Godar.A09G052000.3 | SwissProt | 2021-04-01 | P35687 | 4.51e-4 |
| Gdarwinii_Godar.A09G052000.6 | SwissProt | 2021-04-01 | P35687 | 4.01e-4 |
| Gdarwinii_Godar.A09G052000.1 | SwissProt | 2021-04-01 | P35687 | 5.52e-4 |
| Gdarwinii_Godar.A09G052000.2 | SwissProt | 2021-04-01 | P35687 | 1.39e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
