GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gdarwinii_Godar.A09G090100 [ Godar.A09G090100]	A09	53976529	53982168	v1.1	Gossypium darwinii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gdarwinii_Godar.A09G090100.1 Godar.A09G090100.1	High	No	1124	OG0001368		Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -24.004 AMFE: -0.633 GC content %: 37.900
Gdarwinii_Godar.A09G090100.2 Godar.A09G090100.2	High	No	1119	OG0001368		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -23.852 AMFE: -0.629 GC content %: 37.891
Gdarwinii_Godar.A09G090100.3 Godar.A09G090100.3	High	No	1049	OG0001368		Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -24.357 AMFE: -0.631 GC content %: 38.608

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).