Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.A09G165900 [ Godar.A09G165900] |
A09 | 67441869 | 67446456 | v1.1 | Gossypium darwinii (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.A09G165900.1 Godar.A09G165900.1 |
Low | No | 1182 | OG0000910 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -23.308 AMFE: -0.672 GC content %: 34.687 | |
Gdarwinii_Godar.A09G165900.2 Godar.A09G165900.2 |
Low | No | 1023 | OG0000910 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -25.024 AMFE: -0.650 GC content %: 38.514 | |
Gdarwinii_Godar.A09G165900.3 Godar.A09G165900.3 |
Low | No | 977 | OG0000910 | Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -22.692 AMFE: -0.652 GC content %: 34.800 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gdarwinii_Godar.A09G165900.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/I | |
Gdarwinii_Godar.A09G165900.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/I | |
Gdarwinii_Godar.A09G165900.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/I |