Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.A11G112500 [ Godar.A11G112500] |
A11 | 9582389 | 9590954 | v1.1 | Gossypium darwinii (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.A11G112500.1 Godar.A11G112500.1 |
Low | No | 1098 | OG0011671 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -22.140 AMFE: -0.556 GC content %: 39.800 | |
Gdarwinii_Godar.A11G112500.2 Godar.A11G112500.2 |
Low | No | 455 | OG0011671 | Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -18.484 AMFE: -0.470 GC content %: 39.341 | |
Gdarwinii_Godar.A11G112500.3 Godar.A11G112500.3 |
Low | No | 499 | OG0011671 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -18.216 AMFE: -0.478 GC content %: 38.076 | |
Gdarwinii_Godar.A11G112500.4 Godar.A11G112500.4 |
Low | No | 1041 | OG0011671 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -21.470 AMFE: -0.550 GC content %: 39.001 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gdarwinii_Godar.A11G112500.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac? | |
Gdarwinii_Godar.A11G112500.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac? | |
Gdarwinii_Godar.A11G112500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac? | |
Gdarwinii_Godar.A11G112500.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PiggyBac? |