GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gdarwinii_Godar.A11G123000 [ Godar.A11G123000]	A11	11142851	11147888	v1.1	Gossypium darwinii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gdarwinii_Godar.A11G123000.1 Godar.A11G123000.1	High	No	821	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -20.792 AMFE: -0.556 GC content %: 37.393
Gdarwinii_Godar.A11G123000.2 Godar.A11G123000.2	High	No	691	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -18.813 AMFE: -0.533 GC content %: 35.311
Gdarwinii_Godar.A11G123000.3 Godar.A11G123000.3	High	No	604	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -18.825 AMFE: -0.547 GC content %: 34.437
Gdarwinii_Godar.A11G123000.4 Godar.A11G123000.4	High	No	606	OG0000577		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -18.663 AMFE: -0.531 GC content %: 35.149

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).