Gdarwinii Godar.A12G130900

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gdarwinii_Godar.A12G130900
[ Godar.A12G130900]
A12 75037187 75039204 v1.1 Gossypium darwinii (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gdarwinii_Godar.A12G130900.1
Godar.A12G130900.1
High No 815 OG0001704
Coding potential...
Type: noncoding Potential: -0.916
Folding energies...
MFEI: -23.804 AMFE: -0.647
GC content
%: 36.810
Gdarwinii_Godar.A12G130900.2
Godar.A12G130900.2
High No 581 OG0001704
Coding potential...
Type: noncoding Potential: -0.828
Folding energies...
MFEI: -23.356 AMFE: -0.622
GC content
%: 37.522


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gdarwinii_Godar.A12G130900.png