GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gdarwinii_Godar.D02G191600 [ Godar.D02G191600]	D02	54624861	54637216	v1.1	Gossypium darwinii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gdarwinii_Godar.D02G191600.1 Godar.D02G191600.1	High	No	506	OG0003995		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -25.336 AMFE: -0.616 GC content %: 41.107
Gdarwinii_Godar.D02G191600.2 Godar.D02G191600.2	High	No	578	OG0003995		Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -25.796 AMFE: -0.621 GC content %: 41.522
Gdarwinii_Godar.D02G191600.3 Godar.D02G191600.3	High	No	645	OG0003995		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -23.659 AMFE: -0.625 GC content %: 37.829
Gdarwinii_Godar.D02G191600.4 Godar.D02G191600.4	High	No	650	OG0003995		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -24.108 AMFE: -0.637 GC content %: 37.846

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).