Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.D06G167500 [ Godar.D06G167500] |
D06 | 43837164 | 43839560 | v1.1 | Gossypium darwinii (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gdarwinii_Godar.D06G167500.1 Godar.D06G167500.1 |
Low | No | 988 | OG0000057 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -27.804 AMFE: -0.704 GC content %: 39.474 | |
Gdarwinii_Godar.D06G167500.2 Godar.D06G167500.2 |
Low | No | 931 | OG0000057 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -27.143 AMFE: -0.692 GC content %: 39.205 | |
Gdarwinii_Godar.D06G167500.3 Godar.D06G167500.3 |
Low | No | 941 | OG0000057 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -27.290 AMFE: -0.690 GC content %: 39.532 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gdarwinii_Godar.D06G167500.2 | SwissProt | 2021-04-01 | O65573 | 1.85e-7 |
Gdarwinii_Godar.D06G167500.3 | SwissProt | 2021-04-01 | O65573 | 1.9e-7 |
Gdarwinii_Godar.D06G167500.1 | SwissProt | 2021-04-01 | O65573 | 6.15e-7 |