Gdarwinii Godar.D08G215800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gdarwinii_Godar.D08G215800 [ Godar.D08G215800] |
D08 | 55453600 | 55456642 | v1.1 | Gossypium darwinii (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gdarwinii_Godar.D08G215800.1 Godar.D08G215800.1 |
High | No | 785 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -23.884 AMFE: -0.556 GC content %: 42.930 | |
| Gdarwinii_Godar.D08G215800.2 Godar.D08G215800.2 |
Low | No | 835 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -23.580 AMFE: -0.550 GC content %: 42.874 | |
| Gdarwinii_Godar.D08G215800.3 Godar.D08G215800.3 |
Low | No | 899 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -23.236 AMFE: -0.547 GC content %: 42.492 | |
| Gdarwinii_Godar.D08G215800.4 Godar.D08G215800.4 |
High | No | 844 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -23.174 AMFE: -0.546 GC content %: 42.417 | |
| Gdarwinii_Godar.D08G215800.5 Godar.D08G215800.5 |
Low | No | 1280 | OG0002071 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -23.663 AMFE: -0.600 GC content %: 39.453 | |
| Gdarwinii_Godar.D08G215800.6 Godar.D08G215800.6 |
High | No | 778 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -24.125 AMFE: -0.562 GC content %: 42.931 | |
| Gdarwinii_Godar.D08G215800.7 Godar.D08G215800.7 |
High | No | 1225 | OG0002071 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -23.518 AMFE: -0.599 GC content %: 39.265 | |
| Gdarwinii_Godar.D08G215800.8 Godar.D08G215800.8 |
High | No | 850 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -23.740 AMFE: -0.559 GC content %: 42.471 | |
| Gdarwinii_Godar.D08G215800.9 Godar.D08G215800.9 |
High | No | 679 | OG0000137 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -22.209 AMFE: -0.529 GC content %: 41.973 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gdarwinii_Godar.D08G215800.2 | SwissProt | 2021-04-01 | Q6NNL9 | 2.32e-4 |
| Gdarwinii_Godar.D08G215800.3 | SwissProt | 2021-04-01 | Q6NNL9 | 2.54e-4 |
| Gdarwinii_Godar.D08G215800.5 | SwissProt | 2021-04-01 | Q6NNL9 | 3.8e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
