GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gdarwinii_Godar.D09G083600 [ Godar.D09G083600]	D09	29660371	29663543	v1.1	Gossypium darwinii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gdarwinii_Godar.D09G083600.1 Godar.D09G083600.1	High	No	615	OG0004061		Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -22.699 AMFE: -0.620 GC content %: 36.585
Gdarwinii_Godar.D09G083600.2 Godar.D09G083600.2	Low	No	1204	OG0018620		Get ORF Coding potential... Type: coding Potential: 0.588 Folding energies... MFEI: -21.744 AMFE: -0.548 GC content %: 39.701
Gdarwinii_Godar.D09G083600.3 Godar.D09G083600.3	Low	No	689	OG0018620		Get ORF Coding potential... Type: coding Potential: 0.263 Folding energies... MFEI: -21.509 AMFE: -0.502 GC content %: 42.816

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).