Gdarwinii Godar.D10G207900

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gdarwinii_Godar.D10G207900
[ Godar.D10G207900]
D10 49916316 49916663 v1.1 Gossypium darwinii (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gdarwinii_Godar.D10G207900.1
Godar.D10G207900.1
Low No 348 OG0033656
Coding potential...
Type: coding Potential: 0.121
Folding energies...
MFEI: -18.649 AMFE: -0.427
GC content
%: 43.678


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Gdarwinii_Godar.D10G207900.1  RepBase (RepeatMasker) 2014-01-31 LINE/L1


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gdarwinii_Godar.D10G207900.png