GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gdarwinii_Godar.D13G068200 [ Godar.D13G068200]	D13	7658650	7661923	v1.1	Gossypium darwinii (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gdarwinii_Godar.D13G068200.1 Godar.D13G068200.1	High	No	1042	OG0002606		Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -19.722 AMFE: -0.516 GC content %: 38.196
Gdarwinii_Godar.D13G068200.2 Godar.D13G068200.2	High	No	941	OG0002606		Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -19.756 AMFE: -0.505 GC content %: 39.107
Gdarwinii_Godar.D13G068200.3 Godar.D13G068200.3	High	No	890	OG0002606		Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -19.674 AMFE: -0.509 GC content %: 38.652

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).