| Gene alias | Chrom. | Start | End | Num. of lncRNAs |
|---|---|---|---|---|
| Osativa LOC Os01g01180 | Chr1 | 88986 | 89204 | 1 |
| Osativa LOC Os01g01500 | Chr1 | 259607 | 259909 | 1 |
| Osativa LOC Os01g01590 | Chr1 | 293648 | 294536 | 1 |
| Osativa LOC Os01g01810 | Chr1 | 432435 | 432752 | 1 |
| Osativa LOC Os01g01925 | Chr1 | 507270 | 509225 | 1 |
| Osativa LOC Os01g01990 | Chr1 | 533786 | 534139 | 1 |
| Osativa LOC Os01g02139 | Chr1 | 624087 | 624613 | 1 |
| Osativa LOC Os01g02334 | Chr1 | 738281 | 741794 | 1 |
| Osativa LOC Os01g02490 | Chr1 | 804084 | 806932 | 1 |
| Osativa LOC Os01g03220 | Chr1 | 1301527 | 1302921 | 1 |
| Osativa LOC Os01g03250 | Chr1 | 1315268 | 1315477 | 1 |
| Osativa LOC Os01g03350 | Chr1 | 1350820 | 1351107 | 1 |
| Osativa LOC Os01g03480 | Chr1 | 1401504 | 1403598 | 1 |
| Osativa LOC Os01g03770 | Chr1 | 1580843 | 1582345 | 1 |
| Osativa LOC Os01g03810 | Chr1 | 1597486 | 1598510 | 1 |
| Osativa LOC Os01g03900 | Chr1 | 1670322 | 1670997 | 1 |
| Osativa LOC Os01g03930 | Chr1 | 1681410 | 1681813 | 1 |
| Osativa LOC Os01g03960 | Chr1 | 1707539 | 1707939 | 1 |
| Osativa LOC Os01g03970 | Chr1 | 1710239 | 1710550 | 1 |
| Osativa LOC Os01g04270 | Chr1 | 1897077 | 1897316 | 1 |
| Osativa LOC Os01g04500 | Chr1 | 2003219 | 2003916 | 1 |
| Osativa LOC Os01g04610 | Chr1 | 2068588 | 2069263 | 1 |
| Osativa LOC Os01g04670 | Chr1 | 2101874 | 2102672 | 1 |
| Osativa LOC Os01g04690 | Chr1 | 2108947 | 2109635 | 1 |
| Osativa LOC Os01g04760 | Chr1 | 2162723 | 2162971 | 1 |
| Osativa LOC Os01g05064 | Chr1 | 2377322 | 2377980 | 1 |
| Osativa LOC Os01g05140 | Chr1 | 2406438 | 2408067 | 1 |
| Osativa LOC Os01g05150 | Chr1 | 2414271 | 2415072 | 1 |
| Osativa LOC Os01g05170 | Chr1 | 2422242 | 2422914 | 1 |
| Osativa LOC Os01g05210 | Chr1 | 2448716 | 2449048 | 1 |
| Osativa LOC Os01g05280 | Chr1 | 2487387 | 2487986 | 1 |
| Osativa LOC Os01g05289 | Chr1 | 2488387 | 2491433 | 1 |
| Osativa LOC Os01g05310 | Chr1 | 2500280 | 2501249 | 1 |
| Osativa LOC Os01g05380 | Chr1 | 2542013 | 2542732 | 1 |
| Osativa LOC Os01g05390 | Chr1 | 2547915 | 2548298 | 1 |
| Osativa LOC Os01g05520 | Chr1 | 2629374 | 2630050 | 1 |
| Osativa LOC Os01g06570 | Chr1 | 3095210 | 3095930 | 1 |
| Osativa LOC Os01g06620 | Chr1 | 3122888 | 3124069 | 1 |
| Osativa LOC Os01g06630 | Chr1 | 3124351 | 3125325 | 1 |
| Osativa LOC Os01g07364 | Chr1 | 3478537 | 3478980 | 1 |
| Osativa LOC Os01g07460 | Chr1 | 3536083 | 3536467 | 1 |
| Osativa LOC Os01g07470 | Chr1 | 3540841 | 3541272 | 1 |
| Osativa LOC Os01g07510 | Chr1 | 3587608 | 3587838 | 1 |
| Osativa LOC Os01g07650 | Chr1 | 3682143 | 3682364 | 1 |
| Osativa LOC Os01g07890 | Chr1 | 3818046 | 3818774 | 1 |
| Osativa LOC Os01g07900 | Chr1 | 3819067 | 3819782 | 1 |
| Osativa LOC Os01g08240 | Chr1 | 4023146 | 4023442 | 1 |
| Osativa LOC Os01g08360 | Chr1 | 4099383 | 4101882 | 1 |
| Osativa LOC Os01g08390 | Chr1 | 4116451 | 4116943 | 1 |
| Osativa LOC Os01g08464 | Chr1 | 4175051 | 4177259 | 1 |