GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.A01G130922 [ Gohir.A01G130922]	A01	42799295	42814905	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.A01G130922.1 Gohir.A01G130922.1	Low	No	2198	OG0011593		Get ORF Coding potential... Type: coding Potential: 1.743 Folding energies... MFEI: -25.719 AMFE: -0.579 GC content %: 44.404
Ghirsutum_Gohir.A01G130922.2 Gohir.A01G130922.2	High	No	963	OG0011593		Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -20.737 AMFE: -0.489 GC content %: 42.368
Ghirsutum_Gohir.A01G130922.3 Gohir.A01G130922.3	High	No	973	OG0011593		Get ORF Coding potential... Type: noncoding Potential: -1.330 Folding energies... MFEI: -21.264 AMFE: -0.502 GC content %: 42.343

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).