Ghirsutum Gohir.A01G162600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.A01G162600 [ Gohir.A01G162600] |
A01 | 101402954 | 101405266 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.A01G162600.10 Gohir.A01G162600.10 |
High | No | 929 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -23.800 AMFE: -0.643 GC content %: 37.029 | |
| Ghirsutum_Gohir.A01G162600.11 Gohir.A01G162600.11 |
High | No | 1047 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.803 Folding energies... MFEI: -23.372 AMFE: -0.651 GC content %: 35.912 | |
| Ghirsutum_Gohir.A01G162600.3 Gohir.A01G162600.3 |
High | No | 1145 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -22.795 AMFE: -0.640 GC content %: 35.633 | |
| Ghirsutum_Gohir.A01G162600.4 Gohir.A01G162600.4 |
High | No | 901 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -24.029 AMFE: -0.650 GC content %: 36.959 | |
| Ghirsutum_Gohir.A01G162600.7 Gohir.A01G162600.7 |
High | No | 934 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.584 Folding energies... MFEI: -23.865 AMFE: -0.644 GC content %: 37.045 | |
| Ghirsutum_Gohir.A01G162600.8 Gohir.A01G162600.8 |
High | No | 1052 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.609 Folding energies... MFEI: -23.432 AMFE: -0.652 GC content %: 35.932 | |
| Ghirsutum_Gohir.A01G162600.9 Gohir.A01G162600.9 |
High | No | 1027 | OG0004133 | Get ORF Coding potential... Type: noncoding Potential: -0.555 Folding energies... MFEI: -22.980 AMFE: -0.628 GC content %: 36.611 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
