GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.A04G093000 [ Gohir.A04G093000]	A04	77911278	77914025	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.A04G093000.1 Gohir.A04G093000.1	High	No	1086	OG0000251		Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -23.490 AMFE: -0.628 GC content %: 37.385
Ghirsutum_Gohir.A04G093000.2 Gohir.A04G093000.2	High	No	1001	OG0000251		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -23.287 AMFE: -0.620 GC content %: 37.562
Ghirsutum_Gohir.A04G093000.3 Gohir.A04G093000.3	High	No	1091	OG0000251		Get ORF Coding potential... Type: noncoding Potential: -0.870 Folding energies... MFEI: -23.676 AMFE: -0.633 GC content %: 37.397
Ghirsutum_Gohir.A04G093000.4 Gohir.A04G093000.4	High	No	1048	OG0000251		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -22.529 AMFE: -0.610 GC content %: 36.927

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).