Ghirsutum Gohir.A05G334300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.A05G334300 [ Gohir.A05G334300] |
A05 | 82047854 | 82050762 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.A05G334300.1 Gohir.A05G334300.1 |
High | No | 1783 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.601 Folding energies... MFEI: -23.937 AMFE: -0.655 GC content %: 36.568 | |
| Ghirsutum_Gohir.A05G334300.10 Gohir.A05G334300.10 |
High | No | 1523 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -24.977 AMFE: -0.678 GC content %: 36.835 | |
| Ghirsutum_Gohir.A05G334300.11 Gohir.A05G334300.11 |
High | No | 1595 | OG0174114 | Get ORF Coding potential... Type: noncoding Potential: -0.541 Folding energies... MFEI: -24.132 AMFE: -0.660 GC content %: 36.552 | |
| Ghirsutum_Gohir.A05G334300.12 Gohir.A05G334300.12 |
High | No | 1712 | OG0174115 | Get ORF Coding potential... Type: noncoding Potential: -0.548 Folding energies... MFEI: -23.843 AMFE: -0.656 GC content %: 36.332 | |
| Ghirsutum_Gohir.A05G334300.13 Gohir.A05G334300.13 |
High | No | 1383 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.526 Folding energies... MFEI: -23.500 AMFE: -0.646 GC content %: 36.370 | |
| Ghirsutum_Gohir.A05G334300.14 Gohir.A05G334300.14 |
High | No | 1661 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -24.124 AMFE: -0.658 GC content %: 36.665 | |
| Ghirsutum_Gohir.A05G334300.15 Gohir.A05G334300.15 |
High | No | 1778 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -23.898 AMFE: -0.656 GC content %: 36.445 | |
| Ghirsutum_Gohir.A05G334300.16 Gohir.A05G334300.16 |
High | No | 1756 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.542 Folding energies... MFEI: -23.793 AMFE: -0.652 GC content %: 36.503 | |
| Ghirsutum_Gohir.A05G334300.2 Gohir.A05G334300.2 |
High | No | 1739 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.660 Folding energies... MFEI: -23.974 AMFE: -0.659 GC content %: 36.400 | |
| Ghirsutum_Gohir.A05G334300.3 Gohir.A05G334300.3 |
High | No | 1622 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -24.174 AMFE: -0.660 GC content %: 36.621 | |
| Ghirsutum_Gohir.A05G334300.4 Gohir.A05G334300.4 |
High | No | 1600 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -24.225 AMFE: -0.660 GC content %: 36.688 | |
| Ghirsutum_Gohir.A05G334300.5 Gohir.A05G334300.5 |
High | No | 1717 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -23.931 AMFE: -0.656 GC content %: 36.459 | |
| Ghirsutum_Gohir.A05G334300.6 Gohir.A05G334300.6 |
High | No | 1388 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -23.638 AMFE: -0.647 GC content %: 36.527 | |
| Ghirsutum_Gohir.A05G334300.7 Gohir.A05G334300.7 |
High | No | 1761 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.599 Folding energies... MFEI: -23.833 AMFE: -0.651 GC content %: 36.627 | |
| Ghirsutum_Gohir.A05G334300.8 Gohir.A05G334300.8 |
High | No | 1290 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.586 Folding energies... MFEI: -24.496 AMFE: -0.665 GC content %: 36.822 | |
| Ghirsutum_Gohir.A05G334300.9 Gohir.A05G334300.9 |
High | No | 1640 | OG0000056 | Get ORF Coding potential... Type: noncoding Potential: -0.633 Folding energies... MFEI: -24.616 AMFE: -0.673 GC content %: 36.585 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
