Ghirsutum Gohir.A06G146400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.A06G146400 [ Gohir.A06G146400] |
A06 | 115905630 | 115908551 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.A06G146400.1 Gohir.A06G146400.1 |
High | No | 1056 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -23.807 AMFE: -0.653 GC content %: 36.458 | |
| Ghirsutum_Gohir.A06G146400.3 Gohir.A06G146400.3 |
High | No | 1061 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -23.600 AMFE: -0.647 GC content %: 36.475 | |
| Ghirsutum_Gohir.A06G146400.4 Gohir.A06G146400.4 |
High | No | 1049 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -23.794 AMFE: -0.650 GC content %: 36.606 | |
| Ghirsutum_Gohir.A06G146400.5 Gohir.A06G146400.5 |
High | No | 1054 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -23.653 AMFE: -0.646 GC content %: 36.622 | |
| Ghirsutum_Gohir.A06G146400.6 Gohir.A06G146400.6 |
High | No | 930 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -23.473 AMFE: -0.642 GC content %: 36.559 | |
| Ghirsutum_Gohir.A06G146400.7 Gohir.A06G146400.7 |
High | No | 966 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -23.509 AMFE: -0.645 GC content %: 36.439 | |
| Ghirsutum_Gohir.A06G146400.8 Gohir.A06G146400.8 |
High | No | 1034 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -22.998 AMFE: -0.641 GC content %: 35.880 | |
| Ghirsutum_Gohir.A06G146400.9 Gohir.A06G146400.9 |
High | No | 1029 | OG0000093 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -22.818 AMFE: -0.636 GC content %: 35.860 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
