GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.A07G100000 [ Gohir.A07G100000]	A07	17634985	17636882	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.A07G100000.1 Gohir.A07G100000.1	High	No	1604	OG0008386		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -29.121 AMFE: -0.690 GC content %: 42.207
Ghirsutum_Gohir.A07G100000.2 Gohir.A07G100000.2	High	No	1290	OG0008386		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -28.132 AMFE: -0.663 GC content %: 42.403
Ghirsutum_Gohir.A07G100000.3 Gohir.A07G100000.3	High	No	1355	OG0008386		Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -27.550 AMFE: -0.657 GC content %: 41.919

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).