GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.A08G074600 [ Gohir.A08G074600]	A08	16140705	16146526	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.A08G074600.2 Gohir.A08G074600.2	High	No	1517	OG0003070		Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -19.851 AMFE: -0.505 GC content %: 39.288
Ghirsutum_Gohir.A08G074600.3 Gohir.A08G074600.3	High	No	1110	OG0003070		Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -19.670 AMFE: -0.507 GC content %: 38.829
Ghirsutum_Gohir.A08G074600.4 Gohir.A08G074600.4	High	No	1185	OG0003070		Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -17.418 AMFE: -0.410 GC content %: 42.447

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).