GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.A09G133200 [ Gohir.A09G133200]	A09	72383534	72385853	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.A09G133200.1 Gohir.A09G133200.1	High	No	956	OG0003082		Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -23.682 AMFE: -0.597 GC content %: 39.644
Ghirsutum_Gohir.A09G133200.2 Gohir.A09G133200.2	High	No	342	OG0174386		Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -27.135 AMFE: -0.627 GC content %: 43.275
Ghirsutum_Gohir.A09G133200.3 Gohir.A09G133200.3	High	No	948	OG0003082		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -22.236 AMFE: -0.567 GC content %: 39.241
Ghirsutum_Gohir.A09G133200.4 Gohir.A09G133200.4	High	No	563	OG0003082		Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -21.030 AMFE: -0.526 GC content %: 39.964

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).