Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.A11G262000 [ Gohir.A11G262000] |
A11 | 111171644 | 111176673 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.A11G262000.1 Gohir.A11G262000.1 |
Low | No | 1107 | OG0011802 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -21.120 AMFE: -0.572 GC content %: 36.947 | |
Ghirsutum_Gohir.A11G262000.2 Gohir.A11G262000.2 |
Low | No | 979 | OG0011802 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -21.379 AMFE: -0.535 GC content %: 39.939 | |
Ghirsutum_Gohir.A11G262000.3 Gohir.A11G262000.3 |
Low | No | 913 | OG0174590 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -20.931 AMFE: -0.682 GC content %: 30.668 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ghirsutum_Gohir.A11G262000.1 | SwissProt | 2021-04-01 | Q8RWM3 | 1.51e-6 |
Ghirsutum_Gohir.A11G262000.2 | SwissProt | 2021-04-01 | Q8RWM3 | 1.33e-6 |
Ghirsutum_Gohir.A11G262000.3 | SwissProt | 2021-04-01 | Q8RWM3 | 6.3e-7 |