Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.D02G057300 [ Gohir.D02G057300] |
D02 | 7720113 | 7723409 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.D02G057300.10 Gohir.D02G057300.10 |
Low | No | 868 | OG0001721 | Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -24.343 AMFE: -0.686 GC content %: 35.484 | |
Ghirsutum_Gohir.D02G057300.11 Gohir.D02G057300.11 |
Low | No | 872 | OG0001721 | Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -24.599 AMFE: -0.692 GC content %: 35.550 | |
Ghirsutum_Gohir.D02G057300.12 Gohir.D02G057300.12 |
Low | No | 902 | OG0000579 | Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -24.412 AMFE: -0.688 GC content %: 35.477 | |
Ghirsutum_Gohir.D02G057300.6 Gohir.D02G057300.6 |
Low | No | 910 | OG0000579 | Get ORF Coding potential... Type: noncoding Potential: -0.127 Folding energies... MFEI: -24.956 AMFE: -0.692 GC content %: 36.044 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ghirsutum_Gohir.D02G057300.10 | SwissProt | 2021-04-01 | Q41058 | 2.63e-8 |
Ghirsutum_Gohir.D02G057300.11 | SwissProt | 2021-04-01 | Q41058 | 2.66e-8 |
Ghirsutum_Gohir.D02G057300.12 | SwissProt | 2021-04-01 | Q41058 | 2.98e-8 |
Ghirsutum_Gohir.D02G057300.6 | SwissProt | 2021-04-01 | Q41058 | 3.08e-8 |