Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.D02G199150 [ Gohir.D02G199150] |
D02 | 68378440 | 68380032 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.D02G199150.1 Gohir.D02G199150.1 |
Low | No | 641 | OG0001050 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -26.521 AMFE: -0.618 GC content %: 42.902 | |
Ghirsutum_Gohir.D02G199150.2 Gohir.D02G199150.2 |
Low | No | 614 | OG0001050 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -26.026 AMFE: -0.612 GC content %: 42.508 | |
Ghirsutum_Gohir.D02G199150.3 Gohir.D02G199150.3 |
Low | No | 612 | OG0001050 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -25.572 AMFE: -0.604 GC content %: 42.320 | |
Ghirsutum_Gohir.D02G199150.4 Gohir.D02G199150.4 |
Low | No | 608 | OG0001050 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -24.868 AMFE: -0.591 GC content %: 42.105 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ghirsutum_Gohir.D02G199150.3 | SwissProt | 2021-04-01 | P0C2F6 | 6.81e-7 |
Ghirsutum_Gohir.D02G199150.4 | SwissProt | 2021-04-01 | P0C2F6 | 6.75e-7 |
Ghirsutum_Gohir.D02G199150.1 | SwissProt | 2021-04-01 | P0C2F6 | 5.36e-7 |
Ghirsutum_Gohir.D02G199150.2 | SwissProt | 2021-04-01 | P0C2F6 | 2.28e-6 |