GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.D03G038200 [ Gohir.D03G038200]	D03	4629784	4632450	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.D03G038200.2 Gohir.D03G038200.2	High	No	914	OG0019212		Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -20.580 AMFE: -0.627 GC content %: 32.823
Ghirsutum_Gohir.D03G038200.3 Gohir.D03G038200.3	High	No	878	OG0019212		Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -20.216 AMFE: -0.618 GC content %: 32.688
Ghirsutum_Gohir.D03G038200.4 Gohir.D03G038200.4	High	No	781	OG0019212		Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -20.141 AMFE: -0.622 GC content %: 32.394

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).