Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.D09G108700 [ Gohir.D09G108700] |
D09 | 40064646 | 40067680 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ghirsutum_Gohir.D09G108700.1 Gohir.D09G108700.1 |
Low | No | 1322 | OG0019274 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -23.283 AMFE: -0.621 GC content %: 37.519 | |
Ghirsutum_Gohir.D09G108700.2 Gohir.D09G108700.2 |
Low | No | 1316 | OG0019274 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -23.427 AMFE: -0.624 GC content %: 37.538 | |
Ghirsutum_Gohir.D09G108700.3 Gohir.D09G108700.3 |
Low | No | 1312 | OG0019274 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -23.491 AMFE: -0.626 GC content %: 37.500 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ghirsutum_Gohir.D09G108700.1 | SwissProt | 2021-04-01 | Q9FGL9 | 5.63e-4 |
Ghirsutum_Gohir.D09G108700.2 | SwissProt | 2021-04-01 | Q9FGL9 | 5.59e-4 |
Ghirsutum_Gohir.D09G108700.3 | SwissProt | 2021-04-01 | Q9FGL9 | 2.12e-4 |