Ghirsutum Gohir.D10G059000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.D10G059000 [ Gohir.D10G059000] |
D10 | 5706572 | 5711085 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.D10G059000.10 Gohir.D10G059000.10 |
High | No | 1218 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -23.563 AMFE: -0.638 GC content %: 36.946 | |
| Ghirsutum_Gohir.D10G059000.12 Gohir.D10G059000.12 |
High | No | 1386 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -24.235 AMFE: -0.650 GC content %: 37.302 | |
| Ghirsutum_Gohir.D10G059000.13 Gohir.D10G059000.13 |
High | No | 1052 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -24.601 AMFE: -0.639 GC content %: 38.498 | |
| Ghirsutum_Gohir.D10G059000.14 Gohir.D10G059000.14 |
High | No | 1387 | OG0175609 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -24.477 AMFE: -0.647 GC content %: 37.851 | |
| Ghirsutum_Gohir.D10G059000.15 Gohir.D10G059000.15 |
High | No | 1297 | OG0008224 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -23.901 AMFE: -0.643 GC content %: 37.163 | |
| Ghirsutum_Gohir.D10G059000.16 Gohir.D10G059000.16 |
High | No | 1303 | OG0175610 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -24.351 AMFE: -0.646 GC content %: 37.682 | |
| Ghirsutum_Gohir.D10G059000.17 Gohir.D10G059000.17 |
High | No | 1294 | OG0034169 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -24.119 AMFE: -0.645 GC content %: 37.403 | |
| Ghirsutum_Gohir.D10G059000.2 Gohir.D10G059000.2 |
High | No | 1222 | OG0000335 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -23.380 AMFE: -0.638 GC content %: 36.661 | |
| Ghirsutum_Gohir.D10G059000.6 Gohir.D10G059000.6 |
High | No | 1413 | OG0034170 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -24.798 AMFE: -0.662 GC content %: 37.438 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
