GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.D10G126350 [ Gohir.D10G126350]	D10	22388801	22390259	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.D10G126350.1 Gohir.D10G126350.1	High	No	607	OG0019280		Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -31.977 AMFE: -0.647 GC content %: 49.423
Ghirsutum_Gohir.D10G126350.2 Gohir.D10G126350.2	High	No	599	OG0019280		Get ORF Coding potential... Type: noncoding Potential: -1.343 Folding energies... MFEI: -31.970 AMFE: -0.647 GC content %: 49.416
Ghirsutum_Gohir.D10G126350.3 Gohir.D10G126350.3	High	No	577	OG0019280		Get ORF Coding potential... Type: noncoding Potential: -1.340 Folding energies... MFEI: -27.886 AMFE: -0.646 GC content %: 43.154

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).