Ghirsutum Gohir.D10G168400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.D10G168400 [ Gohir.D10G168400] |
D10 | 49038513 | 49041260 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.D10G168400.2 Gohir.D10G168400.2 |
High | No | 965 | OG0001056 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.503 AMFE: -0.687 GC content %: 37.098 | |
| Ghirsutum_Gohir.D10G168400.3 Gohir.D10G168400.3 |
High | No | 829 | OG0001056 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -26.526 AMFE: -0.761 GC content %: 34.861 | |
| Ghirsutum_Gohir.D10G168400.4 Gohir.D10G168400.4 |
High | No | 810 | OG0001056 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -26.321 AMFE: -0.730 GC content %: 36.049 | |
| Ghirsutum_Gohir.D10G168400.5 Gohir.D10G168400.5 |
High | No | 749 | OG0001056 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -26.462 AMFE: -0.759 GC content %: 34.846 | |
| Ghirsutum_Gohir.D10G168400.6 Gohir.D10G168400.6 |
High | No | 874 | OG0001056 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -25.744 AMFE: -0.678 GC content %: 37.986 | |
| Ghirsutum_Gohir.D10G168400.7 Gohir.D10G168400.7 |
High | No | 729 | OG0001056 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -26.310 AMFE: -0.727 GC content %: 36.214 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
