GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ghirsutum_Gohir.D10G210300 [ Gohir.D10G210300]	D10	60475676	60479784	v2.1	Gossypium hirsutum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ghirsutum_Gohir.D10G210300.1 Gohir.D10G210300.1	High	No	1854	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -24.266 AMFE: -0.729 GC content %: 33.279
Ghirsutum_Gohir.D10G210300.3 Gohir.D10G210300.3	High	No	893	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -23.897 AMFE: -0.655 GC content %: 36.506
Ghirsutum_Gohir.D10G210300.4 Gohir.D10G210300.4	High	No	1131	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -23.599 AMFE: -0.649 GC content %: 36.340
Ghirsutum_Gohir.D10G210300.5 Gohir.D10G210300.5	High	No	1089	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.630 Folding energies... MFEI: -24.040 AMFE: -0.654 GC content %: 36.731

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).