Ghirsutum Gohir.D13G009900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.D13G009900 [ Gohir.D13G009900] |
D13 | 902071 | 905161 | v2.1 | Gossypium hirsutum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ghirsutum_Gohir.D13G009900.1 Gohir.D13G009900.1 |
High | No | 846 | OG0002605 | Get ORF Coding potential... Type: noncoding Potential: -0.542 Folding energies... MFEI: -21.513 AMFE: -0.659 GC content %: 32.624 | |
| Ghirsutum_Gohir.D13G009900.2 Gohir.D13G009900.2 |
High | No | 1272 | OG0003204 | Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -21.745 AMFE: -0.688 GC content %: 31.604 | |
| Ghirsutum_Gohir.D13G009900.3 Gohir.D13G009900.3 |
High | No | 758 | OG0175858 | Get ORF Coding potential... Type: noncoding Potential: -0.517 Folding energies... MFEI: -21.148 AMFE: -0.657 GC content %: 32.190 | |
| Ghirsutum_Gohir.D13G009900.4 Gohir.D13G009900.4 |
High | No | 851 | OG0002605 | Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -21.281 AMFE: -0.651 GC content %: 32.667 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
