GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.01G150600 [ Glyma.01G150600]	Gm01	49864116	49866773	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.01G150600.1 Glyma.01G150600.1	High	No	572	OG0165114		Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -27.500 AMFE: -0.634 GC content %: 43.357
Gmax_Glyma.01G150600.2 Glyma.01G150600.2	High	No	456	OG0165115		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -26.842 AMFE: -0.603 GC content %: 44.518

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).