GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.01G175700 [ Glyma.01G175700]	Gm01	52357225	52357746	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.01G175700.1 Glyma.01G175700.1	High	No	297	OG0007341		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -25.051 AMFE: -0.595 GC content %: 42.088
Gmax_Glyma.01G175700.17 Glyma.01G175700.17	High	No	252	OG0007341		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -24.087 AMFE: -0.547 GC content %: 44.048
Gmax_Glyma.01G175700.18 Glyma.01G175700.18	High	No	249	OG0007341		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -24.257 AMFE: -0.539 GC content %: 44.980
Gmax_Glyma.01G175700.3 Glyma.01G175700.3	High	No	228	OG0007341		Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -23.904 AMFE: -0.524 GC content %: 45.614
Gmax_Glyma.01G175700.6 Glyma.01G175700.6	High	No	276	OG0007341		Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -24.638 AMFE: -0.581 GC content %: 42.391

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).