GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.01G198300 [ Glyma.01G198300]	Gm01	54330793	54331350	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.01G198300.1 Glyma.01G198300.1	High	No	348	OG0165150		Get ORF Coding potential... Type: noncoding Potential: -0.183 Folding energies... MFEI: -20.690 AMFE: -0.486 GC content %: 42.529
Gmax_Glyma.01G198300.2 Glyma.01G198300.2	High	No	351	OG0165151		Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -19.744 AMFE: -0.502 GC content %: 39.316

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).