GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.02G060400 [ Glyma.02G060400]	Gm02	5445034	5446273	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.02G060400.1 Glyma.02G060400.1	High	No	689	OG0165232		Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -22.337 AMFE: -0.601 GC content %: 37.155
Gmax_Glyma.02G060400.2 Glyma.02G060400.2	High	No	800	OG0165233		Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -23.250 AMFE: -0.620 GC content %: 37.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).