GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.02G065200 [ Glyma.02G065200]	Gm02	5780075	5782773	A4v1	Glycine max (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.02G065200.1 Glyma.02G065200.1	High	No	861	OG0165237		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -28.165 AMFE: -0.587 GC content %: 47.967
Gmax_Glyma.02G065200.2 Glyma.02G065200.2	High	No	801	OG0165238		Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -26.704 AMFE: -0.556 GC content %: 48.065
Gmax_Glyma.02G065200.4 Glyma.02G065200.4	High	No	703	OG0165239		Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -27.496 AMFE: -0.546 GC content %: 50.356

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).