GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.02G092000 [ Glyma.02G092000]	Gm02	8108209	8111199	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.02G092000.2 Glyma.02G092000.2	High	No	577	OG0017900		Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -26.256 AMFE: -0.639 GC content %: 41.075
Gmax_Glyma.02G092000.5 Glyma.02G092000.5	High	No	717	OG0017900		Get ORF Coding potential... Type: noncoding Potential: -0.764 Folding energies... MFEI: -23.682 AMFE: -0.690 GC content %: 34.310
Gmax_Glyma.02G092000.6 Glyma.02G092000.6	High	No	539	OG0017900		Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -26.549 AMFE: -0.639 GC content %: 41.558

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).