Gmax Glyma.02G099600

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gmax_Glyma.02G099600
[ Glyma.02G099600]
Gm02 9318304 9321246 A4v1 Glycine max (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gmax_Glyma.02G099600.1
Glyma.02G099600.1
Low No 844 OG0031726
Coding potential...
Type: noncoding Potential: -1.172
Folding energies...
MFEI: -19.419 AMFE: -0.530
GC content
%: 36.611
Gmax_Glyma.02G099600.2
Glyma.02G099600.2
High No 605 OG0165269
Coding potential...
Type: noncoding Potential: -1.263
Folding energies...
MFEI: -18.099 AMFE: -0.517
GC content
%: 35.041
Gmax_Glyma.02G099600.3
Glyma.02G099600.3
Low No 759 OG0031726
Coding potential...
Type: noncoding Potential: -1.159
Folding energies...
MFEI: -19.987 AMFE: -0.540
GC content
%: 37.022


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Gmax_Glyma.02G099600.3  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy
Gmax_Glyma.02G099600.1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gmax_Glyma.02G099600.png